PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G169000.3
Common NameB456_008G169000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 537aa    MW: 58147.2 Da    PI: 8.6073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G169000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-052446123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Gorai.008G169000.3 24 FICEVCNKGFQREQNLQLHRRGH 46
                        89*******************88 PP

2zf-C2H213.30.00025100122123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Gorai.008G169000.3 100 WKCEKCSKRYAVQSDWKAHSKTC 122
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-62346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-72346No hitNo description
PfamPF121712.6E-52446IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00522446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.992446IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SMARTSM003551306595IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-588121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.29E-795120No hitNo description
SMARTSM00355130100120IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMETDPDAEV VALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV  60
KKKVYLCPEP TCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKRYA VQSDWKAHSK  120
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQETARHPP PLNSIGTHLY GTSNYMGLGL  180
SQVGTQISSI QDPNNNQTAA DILKLGGGGA SRSSQFDHLL PPSMGCSSSS SFRPQQQAMG  240
FVMEESNQIF NQEHQSQHGL LGNSKPFQGL MQFPPDDNNN NNNNNASNAS SAANLFNLSF  300
LSNSGNNGGA GDYNLTSSGL LMSDNFNNEN GGNGGTNNAA NLFSNNLMSD QMTSNIPSLF  360
SSSVQNNDMV PQMSATALLQ KAAQMGSTSS NKNTNDDSLL RTFANSSSTG TKTSNFGAIF  420
GDTAGNNLHE LMNSIASGNS PIFGSGYDAV HGQESPYTNR SSMGQEQPPQ SMNVSGGGSD  480
RLTRDFLGVG QIVRNMRGGA AQQRQGIGIS RLSSERNSNI TAPTSQQSFG ERGNFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146061e-154JX614606.1 Gossypium hirsutum clone NBRI_GE58125 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438385.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-140IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D2RGQ60.0A0A0D2RGQ6_G
STRINGPOPTR_0008s14180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-100indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]